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Why soils are losing their diversity

A scientific analysis of monocultures, humus degradation, and the systemic consequences for our Earth

For years, I've heard the phrase:
"We are exploiting the Earth."

But as a natural scientist in thought – and a practitioner in the garden – this phrase isn't enough for me.

What exactly happens in the soil?
What processes are taking place there?
And why are scientists worldwide speaking of a loss of soil biodiversity?

I didn't want to believe it.
I wanted to understand it.

Because only if I know the mechanisms can I act purposefully.

And what I found is not an ideological narrative.
It is a systemic process.

I wanted to know if the term "Raubbau" (exploitation) is scientifically sound. Or if it is merely an emotionally charged term in the sustainability discourse. So I looked at the data. And the data is clear. Soils worldwide are losing:
  • organic matter
  • microbial diversity
  • structural stability
  • water retention capacity
  • functional resilience
This is not ideology. This is soil science. And if we want to understand why soils are losing their diversity, we need to look at two central processes:
  1. Functional simplification through monocultures
  2. Loss of organic matter through intensive cultivation

 

1. Soil is a highly complex ecosystem

Before speaking of "loss," it must be clear what is being lost. Healthy soil consists of:
  • 45% mineral substance
  • 25% water
  • 25% air
  • 5% organic matter
These 5% organic matter are the key. Because they are habitat and energy source for:
  • bacteria
  • fungi
  • actinomycetes
  • protozoa
  • nematodes
  • arthropods
  • earthworms
A teaspoon of fertile soil contains billions of microorganisms. These organisms are not just inhabitants.

They are functional agents.
They:
  • mineralize nitrogen
  • mobilize phosphorus
  • stabilize soil aggregates
  • produce polysaccharides
  • form mycorrhizal networks
  • store carbon
Soil is not a substrate.
Soil is a functional network. And precisely this network is increasingly being simplified.


2. Monocultures – when biological diversity is systematically reduced

2.1 Plant diversity controls microbial diversity

A key study by Lange et al. (2015, Nature Communications, DOI: 10.1038/ncomms7704) examined 60 European grassland areas. Result: The higher the plant diversity, the higher the:
  • microbial biomass
  • mycorrhizal density
  • functional activity
Plants release so-called exudates through their roots:
  • sugars
  • amino acids
  • organic acids
  • secondary metabolites
These substances act selectively on microorganisms. Above-ground diversity creates below-ground diversity. This is a measurable correlation


2.2 What monoculture specifically causes

Long-term studies show: Venter et al. (2016, Soil Biology & Biochemistry, DOI: 10.1016/j.soilbio.2016.04.017):
  • Reduced bacterial diversity in monocultures
  • Lower enzymatic activity
  • Dominance of fewer functional groups
This means: The soil ecosystem is functionally simplified. And reduced functional diversity means:
  • lower resilience
  • higher susceptibility to disease
  • greater dependence on external inputs
Monoculture is not just an agro-economic model.
It is a systemic reduction of biological complexity. And complex systems lose their stability through simplification.


3. Humus degradation – the central driver of functional loss

If I had to name only one indicator that describes the state of a soil, it would be: organic matter content.

3.1 Global development of soil carbon

Rattan Lal (2004, Science, DOI: 10.1126/science.1097396) describes:
  • Intensive agriculture has released significant amounts of organic soil carbon worldwide.
  • Soils have transitioned from carbon sinks to carbon sources.
Organic matter is:
  • carbon storage
  • water reservoir
  • nutrient buffer
  • structural stabilizer
When it is lost, the soil loses several functions simultaneously.

3.2 Why plowing degrades humus

Six et al. (2002, Soil & Tillage Research, DOI: 10.1016/S0167-1987(02)00059-8):

Intensive tillage:
  • increases oxygen input
  • accelerates microbial decomposition
  • destabilizes soil aggregates
The result:
  • CO₂ release
  • structural degradation
  • increased susceptibility to erosion
Humus degradation is not a passive process.
It is actively accelerated by cultivation.

3.3 Water retention capacity and organic matter

Rawls et al. (2003, Geoderma, DOI: 10.1016/S0016-7061(03)00094-6):

An increase in organic matter by 1% significantly increases:
  • field capacity
  • plant-available water
In times of increasing drought, this is not a minor matter. Humus is a water reservoir. If we lose it, we lose resilience to climate stress.


4. Why this is not a neutral development

I want to be clear here: The loss of soil biodiversity is not a natural cycle.
It is man-made. It results from:
  • intensification
  • simplification
  • decoupling of cycles
  • focus on short-term yields
And it is measurable. Soil stores more carbon than the atmosphere and vegetation combined. When humus is lost:
  • CO₂ increases
  • water retention capacity decreases
  • erosion increases
  • biodiversity decreases
Soil is a climate actor.
A water regulator.
A foundation of life. This is not a romantic perspective.
This is system analysis.


5. Soil compaction – the underestimated physical factor

In addition to biological impoverishment and humus loss, there is a third central factor: structural collapse due to compaction. Soil does not just consist of material –
it consists of pore spaces.
  • Macropores → air circulation
  • Mesopores → water conduction
  • Micropores → water storage
When soil is compacted:
  • the air content decreases
  • roots grow less effectively
  • microorganisms lose habitat
  • water infiltrates less effectively
Studies show that compaction significantly reduces microbial activity because oxygen limitation restricts biological processes. A compacted soil is biologically and physically disturbed.
And what particularly concerns me: compaction is often irreversible or regenerates only very slowly.


6. Nutrient buffering – why structure and minerals are crucial

In discussions about humus, it is often overlooked that the mineral matrix also plays a central role. A crucial term here is: Cation Exchange Capacity (CEC). It describes the soil's ability to bind positively charged nutrients:
  • Potassium (K⁺)
  • Magnesium (Mg²⁺)
  • Calcium (Ca²⁺)
  • Ammonium (NH₄⁺)
Soils with high CEC:
  • store nutrients
  • prevent leaching
  • supply plants more consistently
Humus contributes to CEC.
But also certain clay minerals and structurally stable silicate minerals. This is where an often overlooked level of soil regeneration begins: Not just thinking organically.
But organically + minerally. A stable system needs both.


7. Silicon – a functional but underestimated building block

Silicon is the second most abundant element in the Earth's crust after oxygen. However, plant-available silicon is not self-evidently present. Scientific studies show:
  • Silicon can stabilize plant cell walls
  • It increases mechanical strength
  • It can improve stress resistance to drought
  • It supports tolerance to biotic stress
Especially in intensively managed soils, the plant-available silicon fraction decreases. Silicon is not a classic "fertilizer".
It is a structural and stability factor. And this is where the circle closes for me: structure determines stability – in the soil as well as in the plant.


8. The logical consequence: Regenerative gardening practices

Once I understand the mechanisms, the practice emerges not from ideology – but from system logic.

8.1 Promote diversity

Mixed cropping
Crop rotation
Flower strips
Green manure

Diversity increases functional stability.

8.2 Build humus

Compost
Mulch
Retain plant residues in the cycle
Incorporate cover crops

Humus increases:

  • water storage

  • nutrient buffering

  • microbial activity

8.3 Disturb the soil as little as possible

  • no unnecessary digging

  • no permanent exposure

  • protection against erosion

Disturbance reduces stability.

8.4 Supplement mineral structure specifically

A stable soil needs:

  • organic matter

  • microbial activity

  • mineral structural components

Structurally stable silicate minerals can:

  • buffer nutrients
  • store water
  • stabilize the soil matrix

Regeneration means integrating all levels.


9. So: Now, an attitude about it

I now consider the term "Raubbau" (exploitation) to be scientifically justified. Not because I want to be alarmist. But because the data shows: In many places, we are extracting faster than systems can regenerate. But I also maintain: Soil regeneration is possible. And it does not begin with global politics. It begins in the square meter. My garden is not an isolated space. It is part of a larger system.
If I:
  • build humus
  • promote diversity
  • stabilize structure
  • support mineral balance
then I am not just working on yield. I am working on system stability.


Why Understanding Changes Action

I wanted to know if soil loss is real. It is.
I wanted to know if it is scientifically explainable. It is.
And I wanted to know if I could do something. I can.
Regeneration is not a utopia.
It is applied soil science.
And it begins exactly where I take responsibility.
In the soil beneath my feet.

→ A comprehensive overview of scientific studies on the effect of zeolite in garden soil can be found in this study overview.

→  Those who want to use zeolite in their own garden will find further information on application and products on the page Zeolite for Garden and Soil Improvement.

Classification from our practice at Steinkraft

Michaela Schirmbrand-Pfeiffer STEINKRAFT ZeolithAt Steinkraft, we have been studying for many years how natural minerals work in the soil and what role they can play in stable soil processes. Zeolite, in particular, is a fascinating example of how geological structures – formed from volcanic activity and long natural processes – possess properties that can fulfill a special function in the soil.

In our work, we combine scientific knowledge with practical experience from horticulture and agriculture. It consistently shows that a deeper understanding of soil processes is the key to sustainable soil care.

Our aim is to convey this knowledge in an understandable way. Because those who understand how water, nutrients, microorganisms, and mineral structures interact in the soil can act more consciously and contribute to living soils and long-term fertile garden cycles.

 

STEINKRAFT Zeolith: About us - Learn more about the people behind it >>

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